School management systems encounter various challenges, including the need for continuous adaptation to evolving educational requirements and technological advancements, ensuring data accuracy and integrity while managing vast amounts of student and administrative information, addressing privacy and security concerns to protect sensitive data, fostering user acceptance and training to maximize system utilization and effectiveness, and overcoming budget constraints for system implementation and maintenance. Additionally, interoperability issues with other educational platforms and maintaining system scalability to accommodate growing student populations and diverse educational needs pose ongoing challenges for effective school management system deployment and operation.